@Sour I noticed a visual glitch when using the Mega Man 3 Improvement hack that happens in Mesen but not Nestopia. On the stage select and sometimes when you bring up weapon select (like in Snake Man’s stage) the bottom 1/3rd of the screen jitters up and down. I think it’s due to this fix mentioned in the hack’s readme:
** Scanline glitch fixed on Weapon Menu screen, Stage Select (on Shadow Man picture), Wily Machine battle, Wily-Gamma battle, Game Ending (Right side of grass field)
Curious if it’s just an issue with the hack not being tested on hardware or not. On the patch page’s change history, kuja killer mentions someone wanting to put it on a real NES cart and doing some updates.