Xbox One Controller Issues

Retroarch haa been running perfect with my oem Xbox one controller connected via Windows using an official wireless adapter. I decided to pickup another Microsoft Xbox one controller. When I go into retroarch I can set controller #1 and controller #2 appropriately, and they both work. When I launch a game (tried multiple cores) neither controller works. I can’t even use the keyboard to access the quick menu. When I launch a core with the 2nd controller off everything works fine. I’ve tried the following;

Reinstalled Retroarch Deleted all auto configs except for the two being used for the controllers. Went into the configuration of my 2nd controller and made sure the device ID matched Retroarch’s system information.

Any suggestions?

Having the same issue. Tried remapping 100s of times. It only maps 1-2 buttons and rest don’t work.