I haven’t messed with the DODBox pure core much, but I have had good results with DOSBox SVN.
I think you’ll find that compatibility will be only about 35% either way. eXo and his team use at least 5 different versions of DOSBox, a couple are custom just for his project.
BTW. On an interesting side note. Here is a graphic I did in 2007 for eXo’s DOS Collection. (Way before he started developing eXoDOS.)

I am very proud to say that I am credited in his readme. 
There was a short discussion here a while back about a virtual video input core for RA that would allow any full screen app to use the shader system.
If anyone who has the skills is reading this, I still think something like this would be a game changer.











