Not sure what you mean by “Track 1 seems good”, but every redump version of rayman i tried was working in Kronos, so the issue appears to be with your dump not being compatible with kronos for some reason. Same for duke 3d.
I highly recommend usage of unmodified redump version, which is the only format thoroughly tested, for any other dump which is misbehaving, i can only recommend to come on kronos’s discord so that we can track the issue together…
Also, please make sure you are using latest version of the core (a66f55a ?), some dumping software are inserting garbage in cues. It was throwing off cue parsing for those dumps and that’s something i fixed only yesterday.
I’ll look into the non-m3u msg, it seems i overlooked something, thanks for the report.